A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
Version: | 0.8.1 |
Depends: | R (≥ 3.0.0), aroma.affymetrix (≥ 2.14.0) |
Imports: | MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.19.0), R.utils (≥ 2.1.0), matrixStats (≥ 0.14.2), R.filesets (≥ 2.9.0), aroma.core (≥ 2.14.0) |
Suggests: | DNAcopy |
Published: | 2015-10-27 |
Author: | Maria Ortiz [aut], Henrik Bengtsson [aut, cre, cph], Angel Rubio [aut] |
Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
BugReports: | https://github.com/HenrikBengtsson/ACNE/issues |
License: | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
URL: | https://github.com/HenrikBengtsson/ACNE |
NeedsCompilation: | no |
Materials: | NEWS |
CRAN checks: | ACNE results |
Reference manual: | ACNE.pdf |
Package source: | ACNE_0.8.1.tar.gz |
Windows binaries: | r-devel: ACNE_0.8.1.zip, r-release: ACNE_0.8.1.zip, r-oldrel: ACNE_0.8.1.zip |
OS X El Capitan binaries: | r-release: ACNE_0.8.1.tgz |
OS X Mavericks binaries: | r-oldrel: ACNE_0.8.1.tgz |
Old sources: | ACNE archive |
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