Creates and runs Bayesian mixing models to analyze biotracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR', and includes both GUI (graphical user interface) and script versions.
| Version: | 3.1.7 |
| Depends: | R (≥ 3.2.3) |
| Imports: | ggplot2 (≥ 1.0.1), rjags (≥ 4-4), R2jags (≥ 0.5-7), MASS (≥ 7.3), RColorBrewer (≥ 1.1), reshape (≥ 0.8), reshape2 (≥ 1.4.1), lattice (≥ 0.20), compositions (≥ 1.40), ggmcmc (≥ 0.7.2), coda (≥ 0.18-1) |
| Suggests: | gWidgets (≥ 0.0-54), gWidgetsRGtk2 (≥ 0.0-83), splancs (≥ 2.01-38), knitr, rmarkdown, testthat |
| Published: | 2016-08-23 |
| Author: | Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb], Jon Moore [ctb], Stuart Bearhop [ctb], Richard Inger [ctb] |
| Maintainer: | Brian Stock <b1stock at ucsd.edu> |
| BugReports: | https://github.com/brianstock/MixSIAR/issues |
| License: | GPL-3 |
| URL: | https://github.com/brianstock/MixSIAR |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (>= 4.1) for the script version, both JAGS and GTK+ for the GUI version. For install instructions, see README file. |
| Citation: | MixSIAR citation info |
| Materials: | README NEWS |
| CRAN checks: | MixSIAR results |
| Reference manual: | MixSIAR.pdf |
| Vignettes: |
MixSIAR Script Example (Cladocera) MixSIAR Script Example (Geese) MixSIAR Script Example (Isopod) MixSIAR Script Example (Killer Whale) MixSIAR Script Example (Lake) MixSIAR Script Example (Wolves) |
| Package source: | MixSIAR_3.1.7.tar.gz |
| Windows binaries: | r-devel: MixSIAR_3.1.7.zip, r-release: MixSIAR_3.1.7.zip, r-oldrel: MixSIAR_3.1.7.zip |
| OS X El Capitan binaries: | r-release: not available |
| OS X Mavericks binaries: | r-oldrel: MixSIAR_3.1.7.tgz |
| Old sources: | MixSIAR archive |
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