Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Version: | 1.5.5 |
Depends: | R (≥ 3.2.0) |
Imports: | Rcpp, randomForest |
LinkingTo: | Rcpp |
Suggests: | knitr, rmarkdown, lme4, glmnet |
Published: | 2018-02-11 |
Author: | Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu. |
Maintainer: | Alencar Xavier <alenxav at gmail.com> |
License: | GPL-3 |
NeedsCompilation: | yes |
Citation: | NAM citation info |
CRAN checks: | NAM results |
Reference manual: | NAM.pdf |
Vignettes: |
Introduction to NAM Background for Meta-analysis |
Package source: | NAM_1.5.5.tar.gz |
Windows binaries: | r-devel: NAM_1.5.5.zip, r-release: NAM_1.5.5.zip, r-oldrel: NAM_1.5.5.zip |
OS X El Capitan binaries: | r-release: NAM_1.5.5.tgz |
OS X Mavericks binaries: | r-oldrel: NAM_1.5.4.tgz |
Old sources: | NAM archive |
Reverse imports: | SoyNAM |
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