The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.
| Version: | 1.0.1 |
| Imports: | stats |
| Suggests: | popkin, testthat, knitr, rmarkdown, RColorBrewer |
| Published: | 2018-01-16 |
| Author: | Alejandro Ochoa [aut, cre], John D. Storey [aut] |
| Maintainer: | Alejandro Ochoa <ochoa at princeton.edu> |
| BugReports: | https://github.com/StoreyLab/bnpsd/issues |
| License: | GPL-3 |
| URL: | https://github.com/StoreyLab/bnpsd/ |
| NeedsCompilation: | no |
| Citation: | bnpsd citation info |
| Materials: | NEWS |
| CRAN checks: | bnpsd results |
| Reference manual: | bnpsd.pdf |
| Vignettes: |
Simulate Genotypes from the BN-PSD Admixture Model |
| Package source: | bnpsd_1.0.1.tar.gz |
| Windows binaries: | r-devel: bnpsd_1.0.1.zip, r-release: bnpsd_1.0.1.zip, r-oldrel: bnpsd_1.0.1.zip |
| OS X El Capitan binaries: | r-release: bnpsd_1.0.1.tgz |
| OS X Mavericks binaries: | r-oldrel: not available |
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