Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.
Version: | 0.1.0 |
Depends: | R (≥ 2.10.0) |
Imports: | DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, magrittr, dplyr, ggplot2, ggridges, tidyr, reshape2, purrr, grid, R.utils |
Suggests: | knitr, rmarkdown, testthat, covr, dbplyr, clusterProfiler, igraph, org.Hs.eg.db, readxl, AnnotationDbi, BiocInstaller |
Published: | 2018-02-13 |
Author: | Mahmoud Ahmed [aut, cre] |
Maintainer: | Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg> |
BugReports: | https://github.com/MahShaaban/cRegulome/issues |
License: | GPL-3 |
URL: | https://github.com/MahShaaban/cRegulome |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | cRegulome results |
Reference manual: | cRegulome.pdf |
Vignettes: |
Case Study Using cRegulome |
Package source: | cRegulome_0.1.0.tar.gz |
Windows binaries: | r-devel: cRegulome_0.1.0.zip, r-release: cRegulome_0.1.0.zip, r-oldrel: cRegulome_0.1.0.zip |
OS X El Capitan binaries: | r-release: cRegulome_0.1.0.tgz |
OS X Mavericks binaries: | r-oldrel: not available |
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