Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et al (2015) <doi:10.1111/age.12259>).
Version: | 0.9.5 |
Depends: | R (≥ 3.0.0) |
Imports: | plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table |
LinkingTo: | Rcpp |
Suggests: | testthat, knitr, rmarkdown, prettydoc |
Published: | 2018-02-06 |
Author: | Filippo Biscarini [aut, cre], Paolo Cozzi [aut], Giustino Gaspa [aut], Gabriele Marras [aut] |
Maintainer: | Filippo Biscarini <filippo.biscarini at gmail.com> |
BugReports: | https://github.com/bioinformatics-ptp/detectRUNS/issues |
License: | GPL-3 |
URL: | https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS |
NeedsCompilation: | yes |
Materials: | README NEWS |
CRAN checks: | detectRUNS results |
Reference manual: | detectRUNS.pdf |
Vignettes: |
detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes |
Package source: | detectRUNS_0.9.5.tar.gz |
Windows binaries: | r-devel: detectRUNS_0.9.5.zip, r-release: detectRUNS_0.9.5.zip, r-oldrel: detectRUNS_0.9.5.zip |
OS X El Capitan binaries: | r-release: detectRUNS_0.9.5.tgz |
OS X Mavericks binaries: | r-oldrel: not available |
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