For a given metabolic model with well formed Gene-Protein-Reaction (GPR) associations and an expressionSet with their associated gene expression values, this package converts gene expression values to the FBA boundaries for each reaction based in the boolean rules described in its associated GPR.
Version: | 0.1 |
Imports: | sybil, gage, igraph |
Suggests: | Biobase |
Published: | 2016-10-11 |
Author: | Daniel Osorio[aut,cre], Kelly Botero[aut,cre], Janneth Gonzalez[aut], Andres Pinzon[aut] |
Maintainer: | Daniel Osorio <dcosorioh at unal.edu.co> |
License: | GPL-2 |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | exp2flux results |
Reference manual: | exp2flux.pdf |
Package source: | exp2flux_0.1.tar.gz |
Windows binaries: | r-devel: exp2flux_0.1.zip, r-release: exp2flux_0.1.zip, r-oldrel: exp2flux_0.1.zip |
OS X El Capitan binaries: | r-release: not available |
OS X Mavericks binaries: | r-oldrel: exp2flux_0.1.tgz |
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