It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.
| Version: | 1.1-21 |
| Depends: | R (≥ 2.10) |
| Suggests: | BradleyTerry2, MASS, Matrix, MCMCglmm, R2jags, bdsmatrix, coda, coxme, foreign, grid, haplo.stats, kinship2, lattice, magic, mets, nlme, pedigree, pedigreemm, regress, rms, survival |
| Published: | 2018-01-24 |
| Author: | Jing Hua Zhao and colleagues with inputs from Kurt Hornik and Brian Ripley |
| Maintainer: | Jing Hua Zhao <jinghua.zhao at mrc-epid.cam.ac.uk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://jinghuazhao.github.io |
| NeedsCompilation: | yes |
| Citation: | gap citation info |
| Materials: | ChangeLog |
| In views: | Genetics, MetaAnalysis |
| CRAN checks: | gap results |
| Reference manual: | gap.pdf |
| Vignettes: |
An overview of gap Heritability estimation using relationship matrices gap: genetic analysis package Example pedigrees for pedtodot Drawing pedigree diagrams with R and graphviz |
| Package source: | gap_1.1-21.tar.gz |
| Windows binaries: | r-devel: gap_1.1-21.zip, r-release: gap_1.1-21.zip, r-oldrel: gap_1.1-21.zip |
| OS X El Capitan binaries: | r-release: gap_1.1-21.tgz |
| OS X Mavericks binaries: | r-oldrel: gap_1.1-20.tgz |
| Old sources: | gap archive |
| Reverse imports: | DHARMa, PopGenReport |
| Reverse suggests: | BayesianTools |
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