A non-parametric method for identifying potential outlying observations in a collection of phylogenetic trees based on the methods of Owen and Provan (2011). Such discordant trees may indicate problems with sequence annotation or tree reconstruction, or they may represent interesting biological phenomena, such as horizontal gene transfers.
| Version: | 0.1.5 |
| Depends: | R (≥ 2.15.1) |
| Imports: | ape, distory, ggplot2 |
| Published: | 2014-05-30 |
| Author: | Grady Weyenberg and Ruriko Yoshida |
| Maintainer: | Grady Weyenberg <grady.weyenberg at uky.edu> |
| License: | GPL-2 |
| URL: | http://github.com/grady/kdetrees |
| NeedsCompilation: | no |
| Citation: | kdetrees citation info |
| Materials: | ChangeLog |
| In views: | Phylogenetics |
| CRAN checks: | kdetrees results |
| Reference manual: | kdetrees.pdf |
| Vignettes: |
kdetrees Manual KDETrees Simulation |
| Package source: | kdetrees_0.1.5.tar.gz |
| Windows binaries: | r-devel: kdetrees_0.1.5.zip, r-release: kdetrees_0.1.5.zip, r-oldrel: kdetrees_0.1.5.zip |
| OS X El Capitan binaries: | r-release: kdetrees_0.1.5.tgz |
| OS X Mavericks binaries: | r-oldrel: kdetrees_0.1.5.tgz |
| Old sources: | kdetrees archive |
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