Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.
| Version: | 1.3.1 |
| Imports: | ape, coda, deSolve |
| Suggests: | DDD, ggplot2, Hmisc, knitr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testit, testthat, TreeSim |
| Published: | 2016-10-12 |
| Author: | Thijs Janzen [aut, cre], Richel Bilderbeek [aut] |
| Maintainer: | Thijs Janzen <thijsjanzen at gmail.com> |
| BugReports: | https://github.com/richelbilderbeek/nLTT/issues |
| License: | GPL-2 |
| URL: | https://github.com/richelbilderbeek/nLTT |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | Phylogenetics |
| CRAN checks: | nLTT results |
| Reference manual: | nLTT.pdf |
| Vignettes: |
Trees with a root edge How to visualize nLTT values distributions How to plot multiple nLTTs and their average How to stretch an nLTT timepoints matrix Walkthrough |
| Package source: | nLTT_1.3.1.tar.gz |
| Windows binaries: | r-devel: nLTT_1.3.1.zip, r-release: nLTT_1.3.1.zip, r-oldrel: nLTT_1.3.1.zip |
| OS X El Capitan binaries: | r-release: nLTT_1.3.1.tgz |
| OS X Mavericks binaries: | r-oldrel: nLTT_1.3.1.tgz |
| Old sources: | nLTT archive |
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