pathClass: Classification using biological pathways as prior knowledge

pathClass is a collection of classification methods that use information about feature connectivity in a biological network as an additional source of information. This additional knowledge is incorporated into the classification a priori. Several authors have shown that this approach significantly increases the classification performance.

Version: 0.9.4
Depends: R (≥ 2.14), svmpath, kernlab, affy, Biobase, ROCR, igraph, lpSolve
Suggests: hu6800.db, golubEsets
Enhances: parallel
Published: 2013-07-01
Author: Marc Johannes
Maintainer: Marc Johannes <JohannesMarc at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: pathClass results


Reference manual: pathClass.pdf
Vignettes: An R Package for classification with prior knowledge of feature connectivity
Package source: pathClass_0.9.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: pathClass_0.9.4.tgz
OS X Mavericks binaries: r-oldrel: pathClass_0.9.4.tgz
Old sources: pathClass archive

Reverse dependencies:

Reverse suggests: exprso


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