Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.
Version: | 1.0.5 |
Imports: | Rcpp (≥ 0.12.10), RColorBrewer, graphics |
LinkingTo: | Rcpp, RcppEigen |
Suggests: | BEDMatrix, testthat, knitr, rmarkdown, lfa |
Published: | 2018-01-26 |
Author: | Alejandro Ochoa [aut, cre], John D. Storey [aut] |
Maintainer: | Alejandro Ochoa <ochoa at princeton.edu> |
BugReports: | https://github.com/StoreyLab/popkin/issues |
License: | GPL-3 |
URL: | https://github.com/StoreyLab/popkin/ |
NeedsCompilation: | yes |
Citation: | popkin citation info |
Materials: | NEWS |
CRAN checks: | popkin results |
Reference manual: | popkin.pdf |
Vignettes: |
Estimate Kinship and FST under Arbitrary Population Structure |
Package source: | popkin_1.0.5.tar.gz |
Windows binaries: | r-devel: popkin_1.0.5.zip, r-release: popkin_1.0.5.zip, r-oldrel: popkin_1.0.5.zip |
OS X El Capitan binaries: | r-release: popkin_1.0.5.tgz |
OS X Mavericks binaries: | r-oldrel: not available |
Old sources: | popkin archive |
Reverse suggests: | bnpsd |
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