A new implementation of EDM algorithms based on research software previously developed for internal use in the Sugihara Lab (UCSD/SIO). Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <doi:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <doi:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described in Sugihara et al. (2012) <doi:10.1126/science.1227079> and multiview embedding as described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Version: | 0.6.9 |
Imports: | Rcpp (≥ 0.11.5), methods |
LinkingTo: | Rcpp, RcppEigen |
Suggests: | knitr, rmarkdown, R.rsp, ggplot2, testthat |
Published: | 2017-12-04 |
Author: | Hao Ye [aut, cre], Adam Clark [aut], Ethan Deyle [aut], Steve Munch [aut], Oliver Keyes [ctb], Jun Cai [ctb], Ethan White [ctb], Jane Cowles [ctb], James Stagge [ctb], Yair Daon [ctb], Andrew Edwards [ctb], George Sugihara [ctb, ccp] |
Maintainer: | Hao Ye <hao.ye at weecology.org> |
License: | file LICENSE |
NeedsCompilation: | yes |
CRAN checks: | rEDM results |
Reference manual: | rEDM.pdf |
Vignettes: |
"co-prediction: using rEDM to quantify dynamic similarity" "Using rEDM to quantify time delays in causation" "rEDM: an R package for Empirical Dynamic Modeling and Convergent Cross Mapping" Simplex and S-map Algorithms |
Package source: | rEDM_0.6.9.tar.gz |
Windows binaries: | r-devel: rEDM_0.6.9.zip, r-release: rEDM_0.6.9.zip, r-oldrel: rEDM_0.6.9.zip |
OS X El Capitan binaries: | r-release: rEDM_0.6.9.tgz |
OS X Mavericks binaries: | r-oldrel: rEDM_0.6.9.tgz |
Old sources: | rEDM archive |
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