Data structures and methods for manipulating output of genetic population structure clustering algorithms. 'starmie' can parse output from 'STRUCTURE' (see <https://pritchardlab.stanford.edu/structure.html> for details) or 'ADMIXTURE' (see <https://www.genetics.ucla.edu/software/admixture/> for details). 'starmie' performs model selection via information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.
| Version: | 0.1.2 |
| Depends: | R (≥ 3.3.0) |
| Imports: | data.table, readr (≥ 1.0.0), stringr, tidyr, purrr, ggplot2 (≥ 2.1.0), iterpc, combinat, label.switching, proxy, MCL, gridExtra, ggdendro, ggrepel, MCMCpack, parallel, methods, stats |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2016-11-07 |
| Author: | Gerry Tonkin-Hill [aut], Stuart Lee [cre, aut] |
| Maintainer: | Stuart Lee <lee.s at wehi.edu.au> |
| BugReports: | https://github.com/sa-lee/starmie/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/sa-lee/starmie |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | starmie results |
| Reference manual: | starmie.pdf |
| Vignettes: |
starmie Admixture models starmie Basic Usage |
| Package source: | starmie_0.1.2.tar.gz |
| Windows binaries: | r-devel: starmie_0.1.2.zip, r-release: starmie_0.1.2.zip, r-oldrel: starmie_0.1.2.zip |
| OS X El Capitan binaries: | r-release: starmie_0.1.2.tgz |
| OS X Mavericks binaries: | r-oldrel: starmie_0.1.2.tgz |
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