SURFACE is a data-driven phylogenetic comparative method for fitting stabilizing selection models to continuous trait data, building on the ouch package. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak.
Version: | 0.4-1 |
Depends: | R (≥ 2.6), ape, ouch, MASS, geiger |
Suggests: | igraph |
Published: | 2014-02-14 |
Author: | Travis Ingram |
Maintainer: | Travis Ingram <travis.ingram at otago.ac.nz> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | http://www.people.fas.harvard.edu/~ingram/web/surface.html |
NeedsCompilation: | no |
Citation: | surface citation info |
In views: | Phylogenetics |
CRAN checks: | surface results |
Reference manual: | surface.pdf |
Vignettes: |
Introduction to surface |
Package source: | surface_0.4-1.tar.gz |
Windows binaries: | r-devel: surface_0.4-1.zip, r-release: surface_0.4-1.zip, r-oldrel: surface_0.4-1.zip |
OS X El Capitan binaries: | r-release: surface_0.4-1.tgz |
OS X Mavericks binaries: | r-oldrel: surface_0.4-1.tgz |
Old sources: | surface archive |
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